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plants

May 16, 2019 by wpengine

A Lot to be Fascinated By in the Herbarium

wildflowers in the woods

Are you fascinated by plants? Fascination of Plants Day is upon us (don’t worry, we didn’t know it was a thing either, but agree celebration is in order!). As you might guess, we in the Section of Botany at the Carnegie Museum of Natural History are definitely into any and all things plants. Plants are inextricable from our daily lives and play critical roles in our environment.  Plus, they are just pretty cool, too. Amid chirping birds or a lion chasing a gazelle, they might be easy to overlook, but they are well worth your attention. From the sidewalk cracks in front of the museum to a remote tropical rainforest, there is a lot to celebrate.

With over half a million plant specimens in the Carnegie Museum herbarium, we have a lot to be fascinated by. Botanists here at the museum and across the world are making new discoveries about plants through these collections. On this 5th annual Fascination of Plants Day, I’d like to share some exciting new work in our collection – extracting fungal DNA from herbarium specimen roots collected over a hundred years ago.

plant specimen with long roots on herbarium sheet

Unexpected inspiration often comes from looking at old specimens in new ways. Museum specimens were collected for many different reasons. The uses of specimens are many, and recently, being used in new ways.  Museum specimens have a lot to tell us. If we look.

Recently, I became fascinated by something often ignored – roots on herbarium specimens. Why do herbarium specimens have roots?

dried plant specimen on herbarium sheet

It is standard practice for botanists to collect the entire plant when possible.  Of course, that isn’t possible for a huge tree, but many plants can fit nicely on an herbarium sheet, roots and all. And  not only do many specimens have roots, but they have soil too.

For some plants, roots can be very helpful for identification. But for the most part, roots on herbarium specimens have not been generally used. But what can 100-year-old roots tell us?

With this new fascination with herbarium specimen roots, I contacted  Dr. David Burke, a microbial ecologist and expert in belowground forest ecology at the Holden Arboretum in Kirkland, Ohio. David studies belowground microbial soil communities and their interactions with plant roots. Nearly 75% of all flowering plant species form close relationships with mycorrhizal fungi. Many plant species in our forests across the eastern United States rely upon these mycorrhizal fungi to obtain water and nutrients necessary for growth. In return, the fungi get food (sugars) from the plant.

herbarium sheet of dried flower with roots

Can herbarium specimen roots tell us about relationships between mycorrhizal fungi and plants?  And perhaps more importantly: Have human activities affected these plant-fungal relationships over the past century?

David Burke had not extracted fungal DNA from herbarium specimen roots, but he was eager to try. (In fact, to our knowledge, no one had done this with herbarium specimen roots before.)  We sampled roots from herbarium specimens of four common forest wildflowers collected in western Pennsylvania between 1881 to 2008. These species included some favorites familiar in our area: red trillium, large-flowered trillium, false Solomon’s seal, and jack-in-the-pulpit.

red-purple flower in the woods

David was able to extract and sequence fungal DNA from plant roots as old as 137 years old! We published our results in a special issue on belowground botany in Applications in Plant Sciences. You can read the full study here.  While there is still much to be done, we showed that museum collections across the world hold enormous potential to provide new insights in the basic belowground biology of plants. They can also help us understand how human activities may affect the web of life in overlooked ways.

Herbarium specimen roots have a lot to tell us about the past, present, and future of our forests in the Anthropocene. And that is fascinating!

woods with many spring wildflowers in bloom

Mason Heberling is Assistant Curator of Botany at the Carnegie Museum of Natural History. Museum employees are encouraged to blog about their unique experiences and knowledge gained from working at the museum.

Filed Under: Blog Tagged With: Botany, Hall of Botany, herbarium, Mason Heberling, plants, Section of Botany

March 18, 2019 by wpengine

What’s a Shamrock?

There is no overwhelming scientific consensus on which species is the well-known Irish national emblem.  There was survey of Irish botanists in the early 1890s asking which species was the “true” shamrock.  A similar survey was repeated in 1988.  The results suggest the shamrock is either Trifolium dubium(aka “lesser trefoil”) or Trifolium repens (aka “white clover”).  The plants commonly sold around St. Patrick’s Day as “shamrocks” or “4-leaf clovers” are in the plant genus Oxalis(“wood sorrel”), which belong to different plant family than true clovers.

four shamrock specimens

Top left: Trifolium repens (collected 1974 in Louisiana), aka “white clover”

Top right: Trifolium dubium (collected 1961 in Pennsylvania), aka “lesser trefoil”

Bottom left: Oxalis tetraphylla (collected 1981 in India), aka “lucky clover,” although not a true clover

Bottom right: Oxalis debilis (collected 1989 in cultivation), aka “pink woodsorrel”

These specimens were recently imaged (along with many others in the legume family, Fabaceae) and are publicly available online.

 

Check back for more! Botanists at the Carnegie Museum of Natural History share digital specimens from the herbarium on dates they were collected. They have embarked on a three-year project to digitize nearly 190,000 plant specimens collected in the region, making images and other data publicly available online. This effort is part of the Mid-Atlantic Megalopolis Project (mamdigitization.org), a network of thirteen herbaria spanning the densely populated urban corridor from Washington, D.C. to New York City to achieve a greater understanding of our urban areas, including the unique industrial and environmental history of the greater Pittsburgh region. This project is made possible by the National Science Foundation under grant no. 1801022.

Mason Heberling is Assistant Curator of Botany at the Carnegie Museum of Natural History. Museum employees are encouraged to blog about their unique experiences and knowledge gained from working at the museum.

Filed Under: Blog Tagged With: Botany, Mason Heberling, plants

February 4, 2019 by wpengine

Happy Groundhog Day!

By Mason Heberling

labrador violet specimen

Do you think Punxsutawney Phil was ever overcome by the beauty of this very violet 71 years ago? Or perhaps he nibbled off a leaf or two? After all, legend has it that Phil is over 100 years old! This specimen of Labrador violet (Viola labradorica) was collected near Phil’s home in Punxsutawney, Pennsylvania on June 2, 1948 by Carnegie Museum botany curator Leroy Henry.

In case you wondered, on Groundhog Day 1948, Punxsutawney Phil saw his shadow and predicted six more weeks of winter.

This specimen was imaged recently (along with many others in the violet family) and is publicly available online.

Check back for more! Botanists at the Carnegie Museum of Natural History share digital specimens from the herbarium on dates they were collected. They have embarked on a three-year project to digitize nearly 190,000 plant specimens collected in the region, making images and other data publicly available online. This effort is part of the Mid-Atlantic Megalopolis Project (mamdigitization.org), a network of thirteen herbaria spanning the densely populated urban corridor from Washington, D.C. to New York City to achieve a greater understanding of our urban areas, including the unique industrial and environmental history of the greater Pittsburgh region. This project is made possible by the National Science Foundation under grant no. 1801022.  

Filed Under: Blog Tagged With: Botany, flowers, Mason Heberling, plants

January 22, 2019 by wpengine

Fruit and Nut Trees Need Chill Time in the Winter

By Bonnie Isaac

It’s cold outside! There is snow on the ground. How could this possibly be good for plants?

dwarf apple tree in the snow
A dwarf apple tree gettin’ its chill on! Photo credit: Joe Isaac

Many of our fruit and nut trees require a cold period to produce fruit. Without cold this winter, we won’t have fruit this fall.  If our fruit trees don’t get enough cold, then the flower buds may not open in the spring.  If the flower buds don’t open, they can’t get pollinated. If pollination doesn’t occur, then fruit doesn’t set. It’s an important cycle that is necessary for our food supply, especially if you like fruits and nuts. Apples, pears, plums, peaches, cherries, almonds, and walnuts all require varying amounts of chill time to set fruit.

Chill hours are the minimum amount of cold a tree needs before it will break dormancy. These trees then need a warm period to follow the chill. If it gets warm too soon or the chill requirement is met early, plants may break dormancy too soon, adding risk of a freeze or frost damage. The amount of fruit a tree sets will be affected if there is a late frost or an early warm spell. There is a delicate balance in nature which determines whether we get fruit or not. So, let’s not grumble about the cold outside. Enjoy it! I, for one, really like fruits and nuts.  I’ll be nestling all snug in my bed with visions of plums dancing in my head because I know the cold is necessary if I want to enjoy fruit this summer and fall.

Bonnie Isaac is the Collection Manager in the Section of Botany. Museum employees are encouraged to blog about their unique experiences and knowledge gained from working at the museum.

Filed Under: Blog Tagged With: Bonnie Isaac, Botany, botany hall, plants, Winter, wintertide

December 31, 2018 by wpengine

Expanding the value of herbarium specimens with citizen science app, iNaturalist

By Mason Heberling

Biological collections are at the heart of the natural history museum. Biological collections are large and diverse, with specimens of shells, bugs, birds, fossils, bones, plants, and more. They were collected anywhere from the sidewalk in front of the museum this past spring to a remote jungle on the other side of the world a century ago.

Each of the roughly 22 million objects at the Carnegie Museum of Natural History have valuable scientific stories to tell. Knowledge derived from museum specimens motivate or inform nearly every aspect of museum practice. Specimens are used directly in museum exhibitions and programming. Specimens are sources of scientific data, used by researchers both at the museum and across the world to understand the past, present, and future of life. And these specimens continue to be used in new and innovative ways to inform us about the world and the impact of humans in the Anthropocene.

Collecting from nature for admiration and study is an ancient practice, with plant collecting among the oldest. The oldest known collection of plants, known as an herbarium (plural: herbaria), dates to 16thcentury Italy!

But specimen collecting is not a dated practice; it is not just something botanists used to do. Plant collecting remains to this day an active and necessary part of botanical science. With over half a million plant specimens, the Carnegie Museum herbarium is not stagnant.  Our collection continues to grow. New specimens are collected and added to the herbarium each year, expanding the scope of the collection and therefore its scientific and societal relevance. In fact, in the recent era of rapid environmental change, new collections are all the more important.

Despite the continued importance of this practice, the standard process for collecting new specimens has change remarkably little through time. Major changes in collection practices include the use of GPS coordinates and to a lesser extent, specific sampling methods for genetic analyses.

In the Section of Botany, Bonnie Isaac (Collections Manager) and I are developing innovative ways to maximize the future use of our collections. One way we are doing this is by linking our collections to the popular citizen science platform, iNaturalist (inaturalist.org). iNaturalist is a free resource available online or as a mobile app that allows users to record biodiversity observations. We are using iNaturalist in the field and in the herbarium to facilitate new collections and expand the research value of specimens.

Herbarium specimen of large flowered trillium (Trillium grandiflorum) with QR code on label
Herbarium specimen of large flowered trillium (Trillium grandiflorum) with QR code on label that directs researchers to the associated iNaturalist observation, including images of the plant in the wild.

Before collecting a specimen, we take images in the field of the specimen in real life. These images are uploaded to iNaturalist, including other data such as date, time, location, and species identification. Other iNaturalist users can also contribute directly through verifying the identity of the specimen or making other comments.

Back in the herbarium, we export this information from iNaturalist to create unique herbarium labels for each specimen. We are using QR codes to link the specimens to the online iNaturalist observation. These QR codes can be read by most mobile devices. Among other information, the iNaturalist observation account online permanently links images from the field to the physical specimens in the herbarium.

What color were the flower petals? What was the size of the plant? Did it have a unique pattern on the bark?  What was the branching pattern? These questions and more can be asked to place herbarium specimens in a more complete context.

We envision a future where researchers can go through the herbarium with a mobile device such as a tablet or smart phone, scan QR codes on specimens, and be immediately directed to images of the specimen in the field.

Our article outlining this approach is available for free online:

Heberling, J. M., and B. L. Isaac. 2018. iNaturalist as a tool to expand the research value of museum specimens. Applications in Plant Sciences 6(11): e1193.  https://bsapubs.onlinelibrary.wiley.com/doi/epdf/10.1002/aps3.1193

Mason Heberling is Assistant Curator of Botany at the Carnegie Museum of Natural History.

 

Check back for more! Botanists at the Carnegie Museum of Natural History have embarked on a three-year project to digitize nearly 190,000 plant specimens collected in the region, making images and other data publicly available online. This effort is part of the Mid-Atlantic Megalopolis Project (mamdigitization.org), a network of thirteen herbaria spanning the densely populated urban corridor from Washington, D.C. to New York City to achieve a greater understanding of our urban areas, including the unique industrial and environmental history of the greater Pittsburgh region. This project is made possible by the National Science Foundation under grant no. 1801022. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.

Filed Under: Blog Tagged With: Bonnie Isaac, Botany, Hall of Botany, herbarium, iNaturalist, Mason Heberling, plants

December 20, 2018 by wpengine

Collected on this Day in 1990: Poinsettia

by Mason Heberling
poinsettia specimen

This poinsettia specimen was collected on December 20, 1990 by Sue Thompson from a potted plant in Pittsburgh.  Poinsettia (Euphorbia pulcherrima) are native to Mexico, but now widely cultivated.

Look closely at the colorful “flowers” of poinsettia.  Upon close inspection, you’ll notice that those bright red or white (or otherwise colorful) structures are not flower petals, but specialized leaves called “bracts.”  The actual flowers are yellow and quite tiny.  The brightly colored bracts function to attract pollinators to the flowers.

Poinsettias are an excellent example of a “short-day” plant. (Or, more accurately, a “long-night” plant.)  That means that as the length of darkness at night increases, a complex process begins that signals flowering and the production of pigments in the bracts.

Poinsettias are woody perennials –  meaning you don’t need to throw them away after the holidays!  However, to flower again for next season, it takes some effort. They must experience days with less than 12 hours of daylight for 8-10 weeks straight.  That means you must provide the plant with 13-16 hours of complete darkness (uninterrupted!) in order for it to flower for December.  This may take some commitment to remember to put it in a dark closet each day, but well worth the effort.  Or just enjoy the green foliage year after year as it grows larger.

Check back for more! Botanists at the Carnegie Museum of Natural History share digital specimens from the herbarium on dates they were collected. They have embarked on a three-year project to digitize nearly 190,000 plant specimens collected in the region, making images and other data publicly available online. This effort is part of the Mid-Atlantic Megalopolis Project (mamdigitization.org), a network of thirteen herbaria spanning the densely populated urban corridor from Washington, D.C. to New York City to achieve a greater understanding of our urban areas, including the unique industrial and environmental history of the greater Pittsburgh region. This project is made possible by the National Science Foundation under grant no. 1801022.  

This specimen image is now publicly available online.

Mason Heberling is Assistant Curator of Botany at Carnegie Museum of Natural History. Museum employees are encouraged to blog about their unique experiences and knowledge gained from working at the museum.

Related Content

Collected on This Day in 1934: European larch

Indiana, Pennsylvania: Christmas Tree Capital of the World

Collected on Christmas Eve 1883: Mistletoe

Carnegie Museum of Natural History Blog Citation Information

Blog author: Heberling, Mason
Publication date: December 20, 2018

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Filed Under: Blog Tagged With: Botany, botany hall, collected on this day, Mason Heberling, plants

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